rs216963446 SNP Detail

Summary

• ID
  rs216963446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40348173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGCTAAG TAAGTAATCA
  ATGAAAATCT TCAATAGAAC AAAGAAAAAG TGAAGAATAA ACAAACTGGA CTGTATCCTT
  GAAGAGCAGA GGCTCGCCAA GGCTCAACGG CAAGCACAGC ACAGGCAAGC TGCTAAGCAA
  CATTGCTGGA CGCCCCCCAG TGTCCACCAG CTCAGATGTT TGATATGTCT CTGCAAATGA
  R
  AACAGAAAGT GGTGAGAGGC AAAACCCAGT CGAATCTTCC CACCATGGGC TCAGCTTTGA
  AAGAAAAGAG GCATGCTTGG AACTGTGTGT GTGTGTGTGT CTGTGTGTGT GTGTTTGTGT
  GTCTGTGTGT GTGTGTCTGC TAGTGTCTGT TTTTGTGTGT ATGTGTGTGT CTCTCTGTGT
  GTGCGTGTGT GTTTGTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377313214	MGP_WTSI_9_40244462	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216963446					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313214	MGP_WTSI_9_40244462	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40348173 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm51668	predicted gene, 51668			within coordinates
Gramd1b	GRAM domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr676832	regulatory region 676832			1018 bp proximal
Rr676833	regulatory region 676833			1679 bp proximal
Tssr88924	transcription start site region 88924			1816 bp upstream
Tssr88925	transcription start site region 88925			1771 bp upstream
Tssr88926	transcription start site region 88926			1724 bp upstream
Tssr88927	transcription start site region 88927			1706 bp upstream
Tssr88928	transcription start site region 88928			1635 bp upstream
Tssr88929	transcription start site region 88929			313 bp downstream
Tssr88930	transcription start site region 88930			368 bp downstream
Tssr88931	transcription start site region 88931			387 bp downstream