rs216967049 SNP Detail

Summary

• ID
  rs216967049
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60437815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT AGAAGTGAGA GTTTTGTTTC
  A
  GTTGCTCTGG TATCTTATCC AAAGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320786574	CHEV_3_60334316	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216967049					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60437815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577418	regulatory region 577418			1235 bp distal
Rr577419	regulatory region 577419			1490 bp proximal
Tssr29297	transcription start site region 29297			1899 bp downstream
Tssr29298	transcription start site region 29298			1873 bp downstream
Tssr29299	transcription start site region 29299			1615 bp downstream
Tssr29300	transcription start site region 29300			1137 bp downstream
Tssr29301	transcription start site region 29301			941 bp downstream
Tssr29302	transcription start site region 29302			813 bp downstream
Tssr29303	transcription start site region 29303			655 bp downstream
Tssr29304	transcription start site region 29304			315 bp downstream
Tssr29305	transcription start site region 29305			69 bp downstream
Tssr29306	transcription start site region 29306			840 bp upstream