rs216971388 SNP Detail

Summary

• ID
  rs216971388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30820157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCGAACC GCAGCCCTGT
  CGGGGGCCTC CCTAGGCTCT CAGCCACCTG AGGGTAGGAT TTCAGACCTG GGCCCAGAGA
  CAGACGTACT CCACTGTCTG GCTGAGGAGA GTGCGCTCCT CAGTTGCTCT GTCTGTGGCT
  TGCACACCTA TGCTCCCTTG GGAGTCCTCT GTCCAGGTGT CCTGCTCCCC TGTCTCTCTG
  Y
  CCCTCCCCGC CCCTCCCCTG TCTCCTCCTC CTAGTTTCTC TTTTCTAAAC ATAAAACTCA
  TCTTCTAACC AAATTCGCAC AGGCACTGAT GGGACATGTG GTTTTTAATA GGAGATGGCC
  ATGATTCAGA AAAGGTGGTG GCACACGCCT TTAATCCCAG CACTTGAGAT CGGCAGGCGG
  ATTTCTGAGT TCGAGGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353526808	MGP_WTSI_2_30785665	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216971388					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353526808	MGP_WTSI_2_30785665	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30820157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11459	CpG island 11459	163 bp distal
Gm57831	predicted gene, 57831	within coordinates
Rr42639	regulatory region 42639	1357 bp distal
Rr53735	regulatory region 53735	1847 bp proximal
Rr56594	regulatory region 56594	1356 bp distal
Rr56595	regulatory region 56595	within coordinates
Tssr17154	transcription start site region 17154	977 bp downstream
Tssr17155	transcription start site region 17155	108 bp downstream
Tssr23407	transcription start site region 23407	1147 bp upstream
Tssr23408	transcription start site region 23408	252 bp upstream
Tssr23409	transcription start site region 23409	237 bp upstream
Tssr23410	transcription start site region 23410	40 bp upstream
Tssr23411	transcription start site region 23411	1877 bp downstream