rs216980019 SNP Detail

Summary

• ID
  rs216980019
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84127278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGACTT GAGGCAGATG
  AACTCAGCTC CAGACAGGGT TTCTTTCTTT GTTTTTGTTT TTTTTTATTA TTATTATTAG
  ATATTTTCTT TATTTACATT TCAAATGTTA TCCCCTTTCC TAGTTTCCCC TCTGAAAACC
  CCCTATCCCC TCCCCTCTCC TCCTGCTCCC CAACCCATCC ACTCCCATTC CTGGTCCTGG
  M
  ATTCCCCTAT ACTGGGGCAT AGAACCTTCA CAGGACCTAG GGCTTCTCCT CCCATTGATG
  ACCAACTAGG CCATCCTCTG CTACATATAT AGCTAGAGCT ACTAGTTCCA CCATGTGTTT
  TCTTTGATTG GTGGTATAGT TCCGAGGAGC TCTGGGGGTA CTGGTTAGTT CATATTGATG
  TTCCTCCTAT GGGGCTTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319823978	CHEV_1_84146132	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216980019					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84127278 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12589	transcription start site region 12589	1185 bp upstream
Tssr12590	transcription start site region 12590	633 bp downstream
Tssr12591	transcription start site region 12591	919 bp downstream
Tssr12592	transcription start site region 12592	1277 bp downstream
Tssr12593	transcription start site region 12593	1312 bp downstream
Tssr12594	transcription start site region 12594	1364 bp downstream
Tssr12595	transcription start site region 12595	1746 bp downstream