rs216981971 SNP Detail

Summary

• ID
  rs216981971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140905873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCCACA CACATTAAAT
  AAATTAACTT TAGAAAAAGA AGAACAACAA CTCTGGGAAG AGATCCGGAT GGCTCAGAAA
  TTTTGAGCAT GCTGTTCTTT CAGAGGACCC AAGAACCTAT GTGAGGTCCT CACAACCATG
  TGTAACTCTA GCTCCAAGAG GAATTGCAGG CACCTGCAAT CACATATATA CACATAAAAA
  W
  ATATATATAT ATCTTTTTTT TTAAAGCTCT AGGAAGCTTC CCTCACTCCT GTGACTGGAT
  CTAGGCTTCA GGTAGGTAGG TACAGCAGAA AACACGCGGA AGCAAGGGTT CTCCACCACT
  GCGTTCCAGT GCCAACGGTC TGAACACCCA CCCAGAGTTA AGCTTCAGCT CTGATGTGCC
  CTGAATAAAA GCCCAATGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373429725	MGP_WTSI_7_148511859	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216981971					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373429725	MGP_WTSI_7_148511859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140905873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19932	CpG island 19932	666 bp proximal
Deaf1	DEAF1, transcription factor	within coordinates
Rr166953	regulatory region 166953	within coordinates
Rr400715	regulatory region 400715	1893 bp upstream
Tssr69944	transcription start site region 69944	1880 bp upstream
Tssr75631	transcription start site region 75631	1550 bp downstream
Tssr75632	transcription start site region 75632	1597 bp downstream
Tssr75633	transcription start site region 75633	1689 bp downstream
Tssr75634	transcription start site region 75634	1715 bp downstream
Tssr75635	transcription start site region 75635	1740 bp downstream
Tssr75636	transcription start site region 75636	1778 bp downstream