rs216988110 SNP Detail

Summary

• ID
  rs216988110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:131453273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAGTGG AAGTCCTTCC
  GCACAACATG GTGTAGGGGA TGCGGGGGTG TGGACGCGCC CAGCTGTGTC CCTAGGAGGG
  AGTGGGTTTG TCTTGGGGTG CCAGAGGAGG GCTAGGCGTT CTTCGCGGGA TTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TACCAGCTCA AAGATTCTGC AAATCAAATC
  Y
  CAAAAGGGTG CCGCTGCAGC GCAGAGTGGG TCGGAAGTCT TTGCTCCGGT TCACTAGCCT
  GTAAATGCAA GAAAAGGGGG GAGGGGGCGA TCAGTCGGAG GGAAGATCCT AATCGCAACA
  GGGGTGGGGT CGGGGATGAC ACTCCAAGTC CAGCTTTGGC CCATTCATCT TGGCCTAACA
  ACGCCCGCTC CGCCCGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452094	MGP_WTSI_1_133422112	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216988110					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452094	MGP_WTSI_1_133422112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131453273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi711	CpG island 711			within coordinates
Gm70877	predicted gene, 70877			1089 bp upstream
Rr396286	regulatory region 396286			1747 bp upstream
Rr418127	regulatory region 418127			1379 bp distal
Rr418128	regulatory region 418128			402 bp distal
Rr418129	regulatory region 418129			599 bp proximal
Rr418130	regulatory region 418130			693 bp proximal
Rr418131	regulatory region 418131			1100 bp proximal
Rr418132	regulatory region 418132			1802 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr8627	transcription start site region 8627			256 bp downstream
Tssr8628	transcription start site region 8628			82 bp downstream
Tssr13589	transcription start site region 13589			373 bp upstream
Tssr13590	transcription start site region 13590			303 bp upstream
Tssr13591	transcription start site region 13591			276 bp upstream
Tssr13592	transcription start site region 13592			184 bp upstream
Tssr13593	transcription start site region 13593			107 bp upstream
Tssr13594	transcription start site region 13594			within coordinates
Tssr13595	transcription start site region 13595			22 bp downstream
Tssr13596	transcription start site region 13596			56 bp downstream
Tssr13597	transcription start site region 13597			301 bp downstream
Tssr13598	transcription start site region 13598			940 bp downstream
Tssr13599	transcription start site region 13599			1021 bp downstream
Tssr13600	transcription start site region 13600			1190 bp downstream
Tssr13601	transcription start site region 13601			1731 bp downstream
Tssr13602	transcription start site region 13602			1767 bp downstream
Tssr13603	transcription start site region 13603			1988 bp downstream