About   Help   FAQ
rs216989566 SNP Detail
Summary
  • ID
    rs216989566
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142132256 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAAATTCTC CAAAGACAGC
CTCACCACAA CTCCCACTTT GGAATCCCTT AGACAGGGCC TGGCATTGTC CCCAGATATC
TCCCTTGATG TCGAGAACAT ATAGCCCCGT AGCCTGCTGA AGCCCTTCAT AGAACGGTGG
TGCCCCAGGC ACCCTGCCAC ACTGAAGCTG CCCTTTACTC AGTTTGTATA ATGACCACAA
Y
GGGAATTTGA GGGCATGGGT CTCATACTAT CCCACGGAGT ATGAACAGCC TACGAGTGGC
TAACCCCCAG CCTTTGTCCT AGTCTGCTTG ACTGACCTTA TCTGGCCGCA GTGGTTTCAA
CAAGGTAGTA GCTAATTTGG GCACTCCTCA CCGTCCCTTT TCTGGGTGAG TCGTCACGTT
TGTCAGGACT CTCTTGCGAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373453180 MGP_WTSI_7_149764424 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216989566 SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373453180 MGP_WTSI_7_149764424 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142132256 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi19965 CpG island 19965 1793 bp proximal
Gm56420 predicted gene, 56420 1596 bp downstream
Gm56421 predicted gene, 56421 601 bp downstream
H19 H19, imprinted maternally expressed transcript 373 bp upstream
Mir675 microRNA 675 1372 bp upstream
Rr27 regulatory region 27 1629 bp proximal
Rr370601 regulatory region 370601 1729 bp upstream
Rr658231 regulatory region 658231 within coordinates
Rr658232 regulatory region 658232 740 bp proximal
Rr658233 regulatory region 658233 1351 bp proximal
Rr658234 regulatory region 658234 1691 bp proximal
Rr658235 regulatory region 658235 1787 bp proximal
Tssr2460 transcription start site region 2460 1259 bp downstream
Tssr2461 transcription start site region 2461 593 bp downstream
Tssr70214 transcription start site region 70214 1866 bp downstream
Tssr70215 transcription start site region 70215 1543 bp downstream
Tssr70216 transcription start site region 70216 1479 bp downstream
Tssr70217 transcription start site region 70217 1462 bp downstream
Tssr70218 transcription start site region 70218 1112 bp downstream
Tssr70219 transcription start site region 70219 1074 bp downstream
Tssr70220 transcription start site region 70220 962 bp downstream
Tssr70221 transcription start site region 70221 923 bp downstream
Tssr70222 transcription start site region 70222 865 bp downstream
Tssr70223 transcription start site region 70223 723 bp downstream
Tssr70224 transcription start site region 70224 678 bp downstream
Tssr70225 transcription start site region 70225 640 bp downstream
Tssr70226 transcription start site region 70226 545 bp downstream
Tssr70227 transcription start site region 70227 463 bp downstream
Tssr70228 transcription start site region 70228 450 bp downstream
Tssr75823 transcription start site region 75823 1988 bp upstream
Tssr75824 transcription start site region 75824 1955 bp upstream
Tssr75825 transcription start site region 75825 1831 bp upstream
Tssr75826 transcription start site region 75826 1783 bp upstream
Tssr75827 transcription start site region 75827 1763 bp upstream
Tssr75828 transcription start site region 75828 1631 bp upstream
Tssr75829 transcription start site region 75829 1141 bp upstream
Tssr75830 transcription start site region 75830 1114 bp upstream
Tssr75831 transcription start site region 75831 1093 bp upstream
Tssr75832 transcription start site region 75832 1027 bp upstream
Tssr75833 transcription start site region 75833 950 bp upstream
Tssr75834 transcription start site region 75834 676 bp upstream
Tssr75835 transcription start site region 75835 644 bp upstream
Tssr75836 transcription start site region 75836 622 bp upstream
Tssr75837 transcription start site region 75837 599 bp upstream
Tssr75838 transcription start site region 75838 529 bp upstream
Tssr75839 transcription start site region 75839 507 bp upstream
Tssr75840 transcription start site region 75840 478 bp upstream
Tssr75841 transcription start site region 75841 451 bp upstream
Tssr75842 transcription start site region 75842 434 bp upstream
Tssr75843 transcription start site region 75843 428 bp upstream
Tssr75844 transcription start site region 75844 398 bp upstream
Tssr75845 transcription start site region 75845 365 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory