rs216993736 SNP Detail

Summary

• ID
  rs216993736
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115507676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTCCTC CGCCTCACCC
  AACCGCCCCA CAAGTTCATT TATTACGTTT AAAGGTATTC ACGGAGAACC CCTCCTAAGA
  GATTGCAGCA AATCCTAGAC GTTTCTCCAT GAACTGATTG CTTAAGAAAG TTTTAACTTT
  AGCCAACGCT TACTTGCACA CACACACACA CGAAAGTCAC CCTGCTAGCG ATAACGAAGC
  W
  CGCCACTTTG TTTTAACTTC AGGTACATTA ATTTCCAGAA ACACATACTG CTAAGTTTGC
  ATGGGCACTT TTAACTTCCT CCGCTCCCCA CACCCCCAAC ATTGCCTCCT CTCAACAGAA
  CTAGCAATCC CTAAAGGGCA CACAGCACTA CTTAAGTTGG ACACACAGCA CTAAATAAGT
  ACTCTAAAGT CTGCACAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359333862	MGP_WTSI_3_115416945	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216993736					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359333862	MGP_WTSI_3_115416945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115507676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	1476 bp distal
Cpgi13725	CpG island 13725	617 bp proximal
Gm9889	predicted gene 9889	996 bp upstream
Rr397956	regulatory region 397956	1905 bp upstream
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	1129 bp upstream
Tssr35273	transcription start site region 35273	1473 bp upstream
Tssr35274	transcription start site region 35274	1414 bp upstream
Tssr35275	transcription start site region 35275	1160 bp upstream
Tssr35276	transcription start site region 35276	280 bp upstream
Tssr35277	transcription start site region 35277	221 bp upstream
Tssr35278	transcription start site region 35278	753 bp downstream
Tssr35279	transcription start site region 35279	775 bp downstream
Tssr35280	transcription start site region 35280	827 bp downstream
Tssr35281	transcription start site region 35281	862 bp downstream
Tssr35282	transcription start site region 35282	906 bp downstream
Tssr35283	transcription start site region 35283	1004 bp downstream