rs217002027 SNP Detail

Summary

• ID
  rs217002027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88243347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGGAGC GTGACACGGA
  GCTCGCGTGT GAAGTTCAGG CCAACCTGCT GGAGTCAATT CACCTTATAC CATGCGGGCT
  CCAGGGGTCG GGCTCAGGTT GGCCGCAAGC GCCTTTAGCC GCTGAGTCAT CTCGCCAGCG
  CGCTCTTTTT AAACTTGAGA CAGGGTCTCT GCACGTAGCA GGGTGGGAAC TCGCTGCAGG
  Y
  TGCCTCGGCT GCCGACGAGC TAGGCGGATG AGCCTGCGCT AGAACGCTCA GTTTCTCTAC
  ATCTGTGGCA ATAAAGTGTC CCCCGAGGAC TTAAGCCCAG CAGAAGCCAT GCCACCCACA
  ACCAGCTCGG TTGACTTCCC GGAGAGAGAA GGCAATTTTT CGCGAGACTT GGTGGGTTGG
  TCGCCGGTCC GCGGCTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358793952	MGP_WTSI_3_88139962	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217002027					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358793952	MGP_WTSI_3_88139962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88243347 () rs orientation: forward

Symbol	Name	Function Class
BC038331	cDNA sequence BC038331	within coordinates
Cpgi13371	CpG island 13371	within coordinates
D3Mit175	DNA segment, Chr 3, Massachusetts Institute of Technology 175	1040 bp distal
Gm65350	predicted gene, 65350	1302 bp downstream
Rr579718	regulatory region 579718	1783 bp distal
Rr579719	regulatory region 579719	1046 bp distal
Rr579720	regulatory region 579720	within coordinates
Rr579721	regulatory region 579721	231 bp proximal
Rr579722	regulatory region 579722	1615 bp proximal
Smg5	SMG5 nonsense mediated mRNA decay factor	220 bp upstream
Tmem79	transmembrane protein 79	1586 bp upstream
Tssr29942	transcription start site region 29942	216 bp upstream
Tssr29943	transcription start site region 29943	1803 bp upstream
Tssr34001	transcription start site region 34001	1574 bp upstream
Tssr34002	transcription start site region 34002	1545 bp upstream
Tssr34003	transcription start site region 34003	125 bp downstream
Tssr34004	transcription start site region 34004	458 bp downstream