rs217008642 SNP Detail

Summary

• ID
  rs217008642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29124256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGACTGTG AAGTTGTATT
  TGTTGATTGC AGAATTCATA GAAACCATTT TAATATTAAA AACTGACAGC CATAATAAAA
  AAGCTACTAC TTATATATAC TCAAGAGCTG CCCAACTGGA ACAGCTAATG CATTCAAGAA
  ATAAAAGAAT AGCAATCTTA GATCATTTTG GGCAAATGTT GTACTAGTGC AGAGTCCCTC
  W
  TTAGGAGTTA AGAGGCATTT ATTTCTACAT TATGAAGAGG AGGGTTTGTC AAAGGAAAAG
  GATAAATATC ATTTGTATGG TAAGTCTCTC TGGGGTCCTT GTAATTTGTT TTGTTAGACA
  GGAAATTCAG TGAAACAGCT TTTGTTAAAG TTTAGTCTTC AAATGGTCAA TTAGACCTTA
  AAGGTTTTAG TTACCTCATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382835311	MGP_WTSI_11_29074256	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217008642					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382835311	MGP_WTSI_11_29074256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29124256 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	698 bp upstream
Cpgi2670	CpG island 2670	585 bp distal
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	within coordinates
Rr369144	regulatory region 369144	1273 bp downstream
Rr444150	regulatory region 444150	1356 bp distal
Rr444151	regulatory region 444151	264 bp distal
Tssr100691	transcription start site region 100691	1331 bp downstream
Tssr100692	transcription start site region 100692	1313 bp downstream
Tssr100693	transcription start site region 100693	1260 bp downstream
Tssr107208	transcription start site region 107208	1500 bp upstream