rs217025174 SNP Detail

Summary

• ID
  rs217025174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGTTGGT CTTATTGTAG
  TGGAGCAGTT GACCAGGCAC GGACAGTCGA GTGGATGGAG GATGGATGGA TGAATGAATG
  AATGGATGGA TGGATGGATG GATGGATGGA TAGATAGATA GATAGATAGA TAGATGATGG
  GTGGGTGGAT GATGGGCGGA TGAATGCATG TGTGCGGTCC CCGTCTGCGC TGCTGACTCT
  Y
  TGGGGCCGCG CCTGGCCACG GTGAGGACGC TGCGGGGCCG GGAGGCGGCG TGGGCGTCGC
  CGCAGGGAGG AGGCCGGCGC GTCCCTCCTC CGGGAGCGCA GCGGCGGCAG CGAGAGCAGC
  GCGCACTGCA GGGCCGACTC CCCGCCCGGA GCCAGCGCCG CGCCCCGCGG CCCCCACGCA
  CGGCGCGGCC CGGCGGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608375	CHEV_2_165420439	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217025174					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	within coordinates
Eya2	EYA transcriptional coactivator and phosphatase 2	93 bp upstream
Rr569954	regulatory region 569954	985 bp distal
Rr569955	regulatory region 569955	within coordinates
Rr569956	regulatory region 569956	104 bp proximal
Rr569957	regulatory region 569957	275 bp proximal
Rr569958	regulatory region 569958	452 bp proximal
Tssr21727	transcription start site region 21727	70 bp upstream
Tssr21728	transcription start site region 21728	1232 bp upstream