rs217027006 SNP Detail

Summary

• ID
  rs217027006
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104423533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAAGAGG TTAGAGGAGG
  AGGAAATAGG CGGGGTGGGT TAGGGGAGAG AGGTTAGAGG GCCGGAGTTT CTCTCATTCA
  CAGGGTGGAA AAGTTGACAT TGTCTAAGCC CTTCTGAATG GCTGGTGGTT GGATACCCCG
  ATTGTACCTC TACTTCCCCT CCCCCTCCAC GTGACGACCC AGGACACATG CGCACCCGAC
  K
  CAGCCGAGGC ACATCTGCAG ACTGACGTCA GTTTGTTCTG CCTCTGAGGA AAGCTGCCAA
  AATTTTCTTC TGCTGCAATT GAAGTTGGCT TGGGGCCGGC AGTGAGCTCG AGGGCTACTT
  CAACAAAACT TTTCCTGCCC TTCCTGCTCC TCTTGTCTTC TCTCTCCTGA TACCTTTTGA
  TGCTCTGCAC ATGTTATTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389790217	MGP_WTSI_13_105077105	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217027006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389790217	MGP_WTSI_13_105077105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104423533 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	810 bp upstream
Gm60746	predicted gene, 60746	within coordinates
Gm60750	predicted gene, 60750	75 bp upstream
Rr369763	regulatory region 369763	within coordinates
Rr403946	regulatory region 403946	707 bp downstream
Rr485428	regulatory region 485428	1416 bp distal
Rr485429	regulatory region 485429	1921 bp distal
Rr485430	regulatory region 485430	within coordinates
Rr485431	regulatory region 485431	180 bp proximal
Rr485432	regulatory region 485432	859 bp proximal
Tssr120915	transcription start site region 120915	8 bp upstream
Tssr120916	transcription start site region 120916	64 bp upstream
Tssr120917	transcription start site region 120917	93 bp upstream
Tssr120918	transcription start site region 120918	111 bp upstream
Tssr120919	transcription start site region 120919	332 bp upstream
Tssr120920	transcription start site region 120920	427 bp upstream
Tssr120921	transcription start site region 120921	466 bp upstream
Tssr120922	transcription start site region 120922	483 bp upstream
Tssr120923	transcription start site region 120923	830 bp upstream
Tssr120924	transcription start site region 120924	877 bp upstream
Tssr120925	transcription start site region 120925	907 bp upstream