rs217029126 SNP Detail

Summary

• ID
  rs217029126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108142047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCATAAT ACCTGTGGAA
  ATCAGAACTG TGGTAGGCTC TGCTCCCTTC CTAACTGACC CCACACTGCT AGAAGGAATC
  CATTCCTCTT TGGCCTAGGG CCAGGCTGGA GTTTCAGACA CAAGCTGTTA TCAGTAAACT
  CATTCTGAAT ACAGACCCGG CGGCTACTCA GCCTGGGATT CCTGCCTAAA GGACGGGCAG
  Y
  TCTCTTCAGA AGAGTCTAGG AGAAAAAATT TTCAGGAAGA AATGCCCTAC CTCAAATACC
  TGTTTGCAAT TTCTCAATTC TTACGTGACT AACTCATAGA GCCTAGAAAA GGAAGAGGAA
  CTAAAATCCA GGAGAGCAAG AGCAGGCCAT CCCTTGGATG TTAATAAACT GAAGAGTTAA
  TGGCTTCTCA GATTCTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378863604	MGP_WTSI_9_108167179	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217029126					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378863604	MGP_WTSI_9_108167179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108142047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22331	CpG island 22331	408 bp distal
Dag1	dystroglycan 1	871 bp upstream
Gm69433	predicted gene, 69433	within coordinates
Rr401678	regulatory region 401678	638 bp downstream
Rr686759	regulatory region 686759	1123 bp distal
Rr686760	regulatory region 686760	1552 bp distal
Rr686761	regulatory region 686761	790 bp distal
Rr686762	regulatory region 686762	within coordinates
Rr686763	regulatory region 686763	1510 bp proximal
Tssr87070	transcription start site region 87070	762 bp downstream
Tssr91511	transcription start site region 91511	1029 bp upstream
Tssr91512	transcription start site region 91512	883 bp upstream