rs217029171 SNP Detail

Summary

• ID
  rs217029171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79493069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACATTA CTTAACCAGC
  TCTGTCAAAC ATGCCCTTTC CCTTCTCCTT CACCGGCCCC TGCCTCCCAG ACAGCCACCC
  TGGCTGATGC TCATCCCGAC GTTGATCCAG CTCACCCCCT TCTCCTCACA GCCTCTAGCA
  GACCCTGCTG TAGTCTCATG AATTCCCTGC TTCCAGCAGA CCCCTTAAAA CTACTCATCA
  Y
  GCGTCGCCGG TACATTCCAC TGTTTCAAAT CTTCCTTTTG CTCAATAGAA CTCAGGCCCC
  ACCTTCCTAA GGGAGCCACA CATGGTATGC AGAAATCAGC CCACCCACTC CTCACCCTCA
  CCCCAGGAAC CCGCCTCCTG ACACACACAC ACACACACAC ACACACACAC TCACACTCAC
  AGTCCATCAG CCTTCATCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032977	MGP_WTSI_7_86988207	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217029171					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032977	MGP_WTSI_7_86988207	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79493069 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	within coordinates
Tssr67371	transcription start site region 67371	1482 bp downstream
Tssr67372	transcription start site region 67372	1231 bp downstream
Tssr67373	transcription start site region 67373	812 bp downstream
Tssr67374	transcription start site region 67374	772 bp downstream
Tssr67375	transcription start site region 67375	736 bp downstream
Tssr73165	transcription start site region 73165	1616 bp upstream
Tssr73166	transcription start site region 73166	1584 bp upstream
Tssr73167	transcription start site region 73167	1382 bp upstream
Tssr73168	transcription start site region 73168	1361 bp upstream
Tssr73169	transcription start site region 73169	1324 bp upstream
Tssr73170	transcription start site region 73170	1305 bp upstream
Tssr73171	transcription start site region 73171	1220 bp upstream
Tssr73172	transcription start site region 73172	1208 bp upstream
Tssr73173	transcription start site region 73173	1190 bp upstream
Tssr73174	transcription start site region 73174	1104 bp upstream
Tssr73175	transcription start site region 73175	1076 bp upstream
Tssr73176	transcription start site region 73176	1019 bp upstream
Tssr73177	transcription start site region 73177	993 bp upstream
Tssr73178	transcription start site region 73178	967 bp upstream
Tssr73179	transcription start site region 73179	902 bp upstream
Tssr73180	transcription start site region 73180	812 bp upstream
Tssr73181	transcription start site region 73181	746 bp upstream
Tssr73182	transcription start site region 73182	734 bp upstream
Tssr73183	transcription start site region 73183	695 bp upstream
Tssr73184	transcription start site region 73184	38 bp upstream
Tssr73185	transcription start site region 73185	1203 bp downstream