rs217048393 SNP Detail

Summary

• ID
  rs217048393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69578054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTAGCT ATGAAAGTAG
  TTACATGTTT TATAGTCTGA GTGATCATGA TGTGACAGGT GGAAGGGGCA TAAGCTATAT
  TTAACAATAG TCGCAGTAGT CAATAAAAAA ACGTAAATCT GGGCTGGAGA TGAATCTCCA
  CTGATGGAGT ACTTTCCTAG TATGCAGAAG ACCTTAAGTT GAATATCTAG CTAGTACTTT
  W
  GTGCATTGGT CAAGTCTGAT TAGTATTGTA GTCCTGTAGT ATTGACTTTA GAATAAATTT
  TAAAAATAGC ATAGACTAAG CCCTTACAAA AATCTATTCT GTTTATTTCA TCAGTATGGT
  CAAGTTTTGC TTTCTCTTGT CCTGTCTTGT GATACTGTAG CTTTACAGAT GGTTGTGAGC
  CTTCATGTGG TTGTGGAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377420	MGP_WTSI_2_69585767	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217048393					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377420	MGP_WTSI_2_69585767	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69578054 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18138	transcription start site region 18138	1671 bp downstream
Tssr18139	transcription start site region 18139	1240 bp upstream
Tssr18140	transcription start site region 18140	1278 bp upstream
Tssr18141	transcription start site region 18141	1293 bp upstream
Tssr18142	transcription start site region 18142	1316 bp upstream
Tssr18143	transcription start site region 18143	1348 bp upstream
Tssr18144	transcription start site region 18144	1552 bp upstream
Tssr18145	transcription start site region 18145	1668 bp upstream
Tssr18146	transcription start site region 18146	1769 bp upstream
Tssr18147	transcription start site region 18147	1818 bp upstream
Tssr18148	transcription start site region 18148	1857 bp upstream
Tssr18149	transcription start site region 18149	1881 bp upstream
Tssr18150	transcription start site region 18150	1927 bp upstream
Tssr18151	transcription start site region 18151	1942 bp upstream