rs217051293 SNP Detail

Summary

• ID
  rs217051293
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151824033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTTGGA AAACCACCAC
  TCGCTCTCAC AGTTCTGACA CCTGTTATCA TCTGGTCAGG AGGCCCAGTA CTTTTCTCTG
  GTCCTTAACC TTGACACAAG CCAGGCATAG CCATCTGTCT CATGGCATCC TCTTGGGAAA
  GTTTCCACCC AGCCTTCCCA CTTACTCCCA CGCAATCACA CAATCACATT TATTATATTT
  W
  TATTTATTTA GTATTTATGT GTTATTATAT ATTAATTCAT ACATTTATAA ATTATACGTA
  TATATTATTA TATAAACATT ATATTATAAT ATACTTACAT ATTATTACAT TTATTTATTA
  TTATGCCCAG CTCCTGAATG AACTGTGCAG TCTACATCAC AGCGCGGCAG CCTCTGAGCC
  TGCGGGACAT TGTAAAGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028125	CHEV_3_151781360	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217051293					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151824033 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587459	regulatory region 587459			1653 bp distal
Rr587460	regulatory region 587460			1710 bp proximal
Tssr1098	transcription start site region 1098			1700 bp downstream
Tssr32394	transcription start site region 32394			1914 bp upstream