rs217060550 SNP Detail

Summary

• ID
  rs217060550
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115434640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cacacacac taaaagtaac tctcagacaa
  gcccaggtac ctggaaaaaa gcagaaataa gactagcaga ctcagagatc agccaaacta
  gaagaaacaa aaaaacagct gagcttcctt aagaggctta gatcacctga aaaggggact
  M
  cctcacctgg tgagctagtg tcctgcagct tcccagaact ggctcccacc ctgagatgga
  gttttgtgat gcagctttct ttgagtggtt tctttctgta actgctcacc atactcctgc
  aagtaacacc aataaaaaag ccattggttc                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892522	CHEV_3_115343909	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217060550					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115434640 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	within coordinates
Rr65099	regulatory region 65099	within coordinates
Rr367536	regulatory region 367536	1338 bp upstream
Rr367537	regulatory region 367537	1737 bp upstream
Tssr35264	transcription start site region 35264	519 bp downstream
Tssr35265	transcription start site region 35265	552 bp downstream