rs217064564 SNP Detail

Summary

• ID
  rs217064564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35122630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTCTAGCT GCATATGTAT CAAAAGATGG CCTAGTCGGC
  CATCACTGGA AAGAGAGGCC CATTGGACAC GCAAACTTTA TATGCCCCAG TACAGGGGAA
  Y
  GCCAGGGCCA AAAAGGGGGA GTGAGTGGGT AGGGGATTGG GGGTGGGTGG GTATGGGGGA
  CTTTTGGTAT AGCATTGGAA ATGTAAATGA GCTAAATAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	SEA/GnJ	SJL/J	SWR/J
ss388237600	MGP_WTSI_13_35030516	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	T	T	T	C	T	T	T	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	SEA/GnJ	SJL/J	SWR/J
rs217064564					SNP	T	T	T	C	C	C	T	T	T	C	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388237600	MGP_WTSI_13_35030516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35122630 () rs orientation: forward

Symbol	Name	Function Class
Gm8245	predicted gene 8245	1996 bp upstream
Tex56	testis expressed 56	within coordinates