rs217067272 SNP Detail

Summary

• ID
  rs217067272
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23120579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG GCCTTACCTT GTCCTGAGAC
  M
  GCATGTTTCA GAGTTGTTGG CATCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325768037	CHEV_19_23217705	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217067272					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23120579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	576 bp distal
Klf9	Kruppel-like transcription factor 9	Intron
Rr545292	regulatory region 545292	1979 bp distal
Tssr155586	transcription start site region 155586	1952 bp downstream
Tssr155587	transcription start site region 155587	1548 bp downstream
Tssr155588	transcription start site region 155588	1514 bp downstream
Tssr158623	transcription start site region 158623	1139 bp upstream
Tssr158624	transcription start site region 158624	795 bp upstream