rs217071292 SNP Detail

Summary

• ID
  rs217071292
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130555180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTCATGA GTATCCCCTT
  AGAAAATGGG GCACCATTTC TGGTAGGTTG GGTCCTGAAG CCTGGCCACC TAGAGATGCT
  CTGGCCCCTC TCTCCTGCCT CCCTCCCCAC ACTTCACTCT TTTCACTGAA GGTTCTCTAA
  TGTCTCCTCT GCGCCTGGCC TGTGCTTGGA CCTGGGAGCC AGGAGGGGCT GGGGAGATGG
  S
  TCAGCGGATA AAGCACTCCG TCACACAAGT GTGAGGACCG TGGTTCGAAC CCTAGGAACT
  CATAAAGCCA GGTGTGGTAG CTCTTGTGTG TAGTCTCCAC ATTTATACAA TGGAATGCAC
  AGAGATGGAA GTCTCTGGAT TCTTGCAGGT GAGCTAGCCT GGGATACTTA GTAGTGAACA
  AGGCACCCTG CCAAGCAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318890	CHEV_4_130383784	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217071292					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130555180 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1556 bp upstream
Gm42316	predicted gene, 42316	1805 bp downstream
Gm69250	predicted gene, 69250	1084 bp upstream
Rr600596	regulatory region 600596	776 bp proximal
Rr600597	regulatory region 600597	1095 bp proximal
Sdc3	syndecan 3	1551 bp downstream
Tssr39293	transcription start site region 39293	1991 bp downstream
Tssr39294	transcription start site region 39294	1831 bp downstream
Tssr39295	transcription start site region 39295	1666 bp downstream
Tssr39296	transcription start site region 39296	1638 bp downstream