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rs217075290 SNP Detail
Summary
  • ID
    rs217075290
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:45110267 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTTCCTGGA GTTTGGTCCA
    GAAGCCTCCT TGCAGGTTGC TCTTTTGGAA TCAAAAGGCC CGAGAGTTAG GGAGAGCAAG
    AACTCAGGAC CCAGAAACAG ACAGTCAGTC TTACGCAGAA CAGTTGGGGC ATGCAAGGCC
    CAACTGGACT TTTGAGGACA GGACGGGCTC ATACCAGGGT CTAATCTCAG AAGCCTGGGA
    R
    GAGAGCAAAG GGAAACGAGC CCAATCATGA AAAGGGGCTA AAGGAAGAAA CAGTAAGATG
    GGTCAAGGGA GCCACGCGGA GCAGGAAGAA TGTGCTGCTG AGGCCCTTAG TGGAAGGGGT
    AGCAAGGCCA GTTCTGCTGA GTCACGCTGA GCTCAGCTAG GCAGTGGGGC GGGCGGCAGG
    CCACACCCGG GCTGACAGCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371177645 MGP_WTSI_7_52716213 EVA_MGPV3 EVA_MGPV3 f SNP G A A A A A A A A A A A A A A A A A A A A G A A A G G A A A A G A A A A G A G A A A A A G G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217075290 SNP G A A A A A A A A A A A A A A A A A A A A G A A A G G A A A A G A A A A G A G A A A A A G G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss371177645 MGP_WTSI_7_52716213 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:45110267 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bax BCL2-associated X protein 854 bp downstream
Cpgi19060 CpG island 19060 1413 bp distal
Cpgi19061 CpG island 19061 709 bp distal
Ftl1 ferritin light polypeptide 1 959 bp upstream
Gm10252 predicted gene 10252 543 bp downstream
Gm73429 predicted gene, 73429 within coordinates
Gm73431 predicted gene, 73431 166 bp upstream
Rr380754 regulatory region 380754 within coordinates
Rr646450 regulatory region 646450 469 bp distal
Rr646451 regulatory region 646451 734 bp distal
Rr646452 regulatory region 646452 within coordinates
Rr646453 regulatory region 646453 177 bp proximal
Rr646454 regulatory region 646454 610 bp proximal
Tssr66541 transcription start site region 66541 1155 bp downstream
Tssr66542 transcription start site region 66542 221 bp upstream
Tssr72395 transcription start site region 72395 1418 bp upstream
Tssr72396 transcription start site region 72396 1386 bp upstream
Tssr72397 transcription start site region 72397 1112 bp upstream
Tssr72398 transcription start site region 72398 962 bp upstream
Tssr72399 transcription start site region 72399 79 bp downstream
Tssr72400 transcription start site region 72400 117 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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