rs217078511 SNP Detail

Summary

• ID
  rs217078511
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACAATA AAGAATTGTC
  CACGGAGCCT GCAGGAAACA CTGCCTGGGC TGCAAGGAGG GGACCAGTTG GAATGAATGA
  GCCAGGATCA GAGCCGGGGC GGGGCGAAGA GAAGCGCACA GCCTTGAATG CTAGCTTTGG
  GCGCGCACGG GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGGGGTG
  A
  TGATGGCAAG ACCCCAGCCC AAGAGGTCTT TGCCTTTGGA TATTAGAATT TCCCTGGCGA
  GCTGCAAGGA AGAGTGGAAG AGATTTGGGT GCTTCCCGAG AGGAGGGAAG GAAACCTGTA
  GCTTGGAGCA AGAGTTTCCA AACTATCTGG ACTATCACTG GCATTTTTAT TTTGCCTGTG
  GCCTTGGAGG CGCCCCTCGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355075040	MGP_WTSI_2_102499901	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217078511					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355075040	MGP_WTSI_2_102499901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1075 bp distal
Rr561714	regulatory region 561714	932 bp distal
Rr561715	regulatory region 561715	453 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1505 bp downstream
Tssr19099	transcription start site region 19099	1433 bp downstream
Tssr19100	transcription start site region 19100	1164 bp downstream
Tssr19101	transcription start site region 19101	1075 bp downstream
Tssr19102	transcription start site region 19102	1049 bp downstream
Tssr19103	transcription start site region 19103	1002 bp downstream
Tssr19104	transcription start site region 19104	980 bp downstream
Tssr19105	transcription start site region 19105	910 bp downstream
Tssr19106	transcription start site region 19106	892 bp downstream
Tssr19107	transcription start site region 19107	872 bp downstream
Tssr19108	transcription start site region 19108	836 bp downstream
Tssr19109	transcription start site region 19109	794 bp downstream
Tssr19110	transcription start site region 19110	512 bp downstream