rs217085194 SNP Detail

Summary

• ID
  rs217085194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135873705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCTCCA CCCCAACATG
  GTTCCTCCCC AGGTGGGCTG CATCAGGCCC CCATCGTCAC AGGATTCCTA TTTATATGAT
  CTCATCTGTG TCGGCCTTGG CATGTGCTAC TTGTATTTCA TAACAAACAT TTCATTACCC
  TTTGTGCATT AACCATAGTG AGCTTTCTGG GGTGAAACAG GGTCGTGGCA GAAGGGGAGG
  R
  GAGGGGAGCA ACCTCCTTGC CAGTTGTCCT TCCAGTCTGA TTAATGGTTT TTAACCTGTC
  TGGTTTCTTC TGATGAACCA ATGGGAGATA TGACCATCTT TCAGAAATCA CACATGAAAT
  TTCGCAGAAT AATGGCAGGC CCCCCACCTC TGGAGGTCCT GTTTCTACAT AAGAAAACTT
  TTGCCTTAAA TTTAATACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363384129	MGP_WTSI_4_135702309	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217085194					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363384129	MGP_WTSI_4_135702309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135873705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15098	CpG island 15098	1240 bp distal
Cpgi15099	CpG island 15099	1139 bp proximal
Gm57159	predicted gene, 57159	1351 bp upstream
Gm68296	predicted gene, 68296	793 bp upstream
Id3	inhibitor of DNA binding 3	1002 bp downstream
Rr377254	regulatory region 377254	within coordinates
Rr602286	regulatory region 602286	861 bp distal
Rr602287	regulatory region 602287	303 bp proximal
Rr602288	regulatory region 602288	804 bp proximal
Tssr39668	transcription start site region 39668	1590 bp downstream
Tssr39669	transcription start site region 39669	827 bp upstream