rs217091128 SNP Detail

Summary

• ID
  rs217091128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104439001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGTAGA CGTATGCAAA
  GTCCCCGTAC CCGGTGACCC AAAAATATAT TAATTAATTA AAAGTAAAAG ATAAATAAAT
  AAATGGGAGA ACGGGGAAGG CTTGCAAAGG GAGAAAGTTG GTGCCAGGTG AGTAAAGCAA
  GCAAACCGCG CGTCCATGCC CCGGCAGCCA CCGACTGCCG CAGTGGCGAA GGCCGGCTCG
  Y
  GAGCGATCGC GACCCTACCT GGGGGCGTCG GGACGCAGGA GCACTGCTGG GCGCCCAGCG
  GCGGCACAGC CCCGCAGCAA GCCGGGCCCA CGGGCGCCGC CTGCACGTGC AGCTGCCCGT
  AGAAGTAGCT GTTGTAGCCC AGGCGGGAGC TGCCGACCGC GGCCGGGAGG CCCGCGCCTC
  CGGGGGCCAC AGGGCGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387185414	MGP_WTSI_12_105710952	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217091128					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387185414	MGP_WTSI_12_105710952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104439001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5026	CpG island 5026	within coordinates
Cpgi5027	CpG island 5027	1599 bp proximal
Gsc	goosecoid homeobox	within coordinates
Gscdt	goosecoid homeobox divergent transcript	589 bp upstream
Rr2050	regulatory region 2050	1855 bp proximal
Rr387727	regulatory region 387727	1104 bp upstream
Rr471922	regulatory region 471922	578 bp proximal
Rr471923	regulatory region 471923	603 bp proximal
Tssr117576	transcription start site region 117576	494 bp downstream
Tssr117577	transcription start site region 117577	624 bp downstream