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rs217099434 SNP Detail
Summary
  • ID
    rs217099434
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr7:142129813 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTCTCAAGC AAGGAAGGAA
CAAAAGGAAA GAAACAGAAT TACAGGAAAG GAGGAAGAAG AAAAAGACAG GAGGGAGATG
ATGAAGTCAT CCCGGGGTAG AGGCTTGGCT CCAGGATGAT GTGGGTGGTG GTCTCCCGGG
TCAGGCAGAG TTGGCCATGA AGATGGATTC TCAGGGGTGG GTGGGTGCTA TGAGTCTGCT
S
TTTCAAAATG TTGACACCAT CTGTTCTTTC AGCTTCACCT GCAAAGAGAA TAAAGACAAA
TGAGGTGGGG CGGGGGGTGG GGTGGGGAGT GGGCTTGGCA AGCTTCCAAA GGGTGCCCCA
GCTCACCTTG GAGCAGATTC CTGAGGCAGG TAGTGTAGTG GTTCTGATTG CAGCATCTTC
TTGATTCAGA ACGAGACGGA                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373453160 MGP_WTSI_7_149761981 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217099434 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373453160 MGP_WTSI_7_149761981 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142129813 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm56420 predicted gene, 56420 777 bp upstream
Gm56421 predicted gene, 56421 1773 bp upstream
H19 H19, imprinted maternally expressed transcript within coordinates
Mir675 microRNA 675 988 bp downstream
Tssr2460 transcription start site region 2460 1167 bp upstream
Tssr2461 transcription start site region 2461 1835 bp upstream
Tssr70212 transcription start site region 70212 542 bp downstream
Tssr70213 transcription start site region 70213 5 bp downstream
Tssr70214 transcription start site region 70214 535 bp upstream
Tssr70215 transcription start site region 70215 872 bp upstream
Tssr70216 transcription start site region 70216 909 bp upstream
Tssr70217 transcription start site region 70217 966 bp upstream
Tssr70218 transcription start site region 70218 1297 bp upstream
Tssr70219 transcription start site region 70219 1336 bp upstream
Tssr70220 transcription start site region 70220 1429 bp upstream
Tssr70221 transcription start site region 70221 1510 bp upstream
Tssr70222 transcription start site region 70222 1525 bp upstream
Tssr70223 transcription start site region 70223 1697 bp upstream
Tssr70224 transcription start site region 70224 1754 bp upstream
Tssr70225 transcription start site region 70225 1792 bp upstream
Tssr70226 transcription start site region 70226 1889 bp upstream
Tssr70227 transcription start site region 70227 1961 bp upstream
Tssr70228 transcription start site region 70228 1984 bp upstream
Tssr75813 transcription start site region 75813 499 bp upstream
Tssr75814 transcription start site region 75814 447 bp upstream
Tssr75815 transcription start site region 75815 283 bp upstream
Tssr75816 transcription start site region 75816 222 bp upstream
Tssr75817 transcription start site region 75817 59 bp upstream
Tssr75818 transcription start site region 75818 within coordinates
Tssr75819 transcription start site region 75819 145 bp downstream
Tssr75820 transcription start site region 75820 190 bp downstream
Tssr75821 transcription start site region 75821 240 bp downstream
Tssr75822 transcription start site region 75822 356 bp downstream
Tssr75823 transcription start site region 75823 416 bp downstream
Tssr75824 transcription start site region 75824 471 bp downstream
Tssr75825 transcription start site region 75825 592 bp downstream
Tssr75826 transcription start site region 75826 642 bp downstream
Tssr75827 transcription start site region 75827 667 bp downstream
Tssr75828 transcription start site region 75828 811 bp downstream
Tssr75829 transcription start site region 75829 1288 bp downstream
Tssr75830 transcription start site region 75830 1318 bp downstream
Tssr75831 transcription start site region 75831 1338 bp downstream
Tssr75832 transcription start site region 75832 1411 bp downstream
Tssr75833 transcription start site region 75833 1488 bp downstream
Tssr75834 transcription start site region 75834 1754 bp downstream
Tssr75835 transcription start site region 75835 1790 bp downstream
Tssr75836 transcription start site region 75836 1812 bp downstream
Tssr75837 transcription start site region 75837 1832 bp downstream
Tssr75838 transcription start site region 75838 1909 bp downstream
Tssr75839 transcription start site region 75839 1922 bp downstream
Tssr75840 transcription start site region 75840 1964 bp downstream
Tssr75841 transcription start site region 75841 1966 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory