rs217100842 SNP Detail

Summary

• ID
  rs217100842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCCCAA TGTCCAGCAG
  AGGAAAAGAA GGTTTTGCCT TTTAGGTGGC CACGGGGTCA GCAGGTGGAG GACCTGTAGG
  TGTCTGGTGT GTCCCAGTCC TCGAGATAAT AAAAGCTGAG CAGAACTTGT CATTATTATG
  CAAAGCTGGG CAGGAGGCTT GGACTCTCCC TCGCAGAAGG CAGAAGCCCA TCTGTCTTTG
  Y
  ACGCCTCCCC CCACGCTCAG AGGCCTGCTG AGAACTGAGC CCTGGGTGGG TGAAGGAGAT
  GCGTCTCCAG CCCTTGGCCC TGGCGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGG
  GAGAGAGAGA GAGAGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439891	CHEV_2_102498084	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217100842					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	667 bp proximal
Gm57687	predicted gene, 57687	1773 bp upstream
Rr561712	regulatory region 561712	1262 bp distal
Rr561713	regulatory region 561713	242 bp proximal
Rr561714	regulatory region 561714	864 bp proximal
Rr561715	regulatory region 561715	864 bp proximal
Rr561716	regulatory region 561716	1365 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	732 bp upstream
Tssr19098	transcription start site region 19098	301 bp upstream
Tssr19099	transcription start site region 19099	353 bp upstream
Tssr19100	transcription start site region 19100	649 bp upstream
Tssr19101	transcription start site region 19101	713 bp upstream
Tssr19102	transcription start site region 19102	750 bp upstream
Tssr19103	transcription start site region 19103	799 bp upstream
Tssr19104	transcription start site region 19104	825 bp upstream
Tssr19105	transcription start site region 19105	891 bp upstream
Tssr19106	transcription start site region 19106	916 bp upstream
Tssr19107	transcription start site region 19107	927 bp upstream
Tssr19108	transcription start site region 19108	970 bp upstream
Tssr19109	transcription start site region 19109	1006 bp upstream
Tssr19110	transcription start site region 19110	1286 bp upstream