rs217103596 SNP Detail

Summary

• ID
  rs217103596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59738591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agccaggTA ACAAAGGGTT TTATGTATAG
  TGCTTAAAAA TAGTACAACA CTAAGAAAAC ACAACTGCTT CTTTCTCATA AAAATCAGAG
  ATACTagccc agcagtgatg gcgcatacct ttaatcctag cactagagag tcagaggcag
  W
  cagatttctg taggccagaa tggtctacag agtcagttcc aggacagcca gggttacaat
  gagaaaccct gtcttgaaga aGGAAAGtat ttatttattt atttatttat ttatttaGAG
  ATACTGAAAA TGTTCTGCAA TGTAAAGATA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319739034	CHEV_1_59756276	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217103596					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59738591 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	8 bp downstream
Rr411703	regulatory region 411703	1318 bp distal
Tssr6887	transcription start site region 6887	1357 bp downstream
Tssr11836	transcription start site region 11836	1653 bp upstream