rs217103789 SNP Detail

Summary

• ID
  rs217103789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:17151712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATGTCA CAGAAGAGCT
  GAGAACAGGT GGGACCCTTG GGTGGCCCAG GGGCTGAAAG GAAAAGGATA GAAGAGAGCT
  CTGTCAGGTT ACCATCGGAA GGAAACAGTC TGGCTAGCTC AGGCAAGCTA GTTAGGTGGG
  CTGCTTGGTT TGACTGGCTG GAGAGCAGGG AGGCTTCCTG GTGGGAGGTT AGATGCACGG
  Y
  TCATTAGGGG AAGACCTGCT CCATTGCTCC ATCATGGTGG TTCCTGAAGA GCAGAGAAGG
  CCCATATTTG TTTTGTTTTG TTTTTTGTTT TGGAGACAGG GTTTCTCTGT ATAGCCCTGG
  CTGTCCTGGC AATTATTGTA GAAAGGCAGA GAGAGGGAAA GAGTAGGGAA GGAGAAGCTG
  GCCATGGCCA AGTGGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325539573	CHEV_18_17177164	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217103789					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:17151712 () rs orientation: forward

Symbol	Name	Function Class
Gm58605	predicted gene, 58605	within coordinates
Rr344746	regulatory region 344746	1089 bp proximal
Tssr150151	transcription start site region 150151	407 bp upstream
Tssr152558	transcription start site region 152558	320 bp downstream