rs217104758 SNP Detail

Summary

• ID
  rs217104758
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136611073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTGTTT TACTAGGGAG
  CGTCCCACTC CCTGAGTTGC ACACTCTTTT TCTTCAAAAA CGAGCTTCCT AAAGAAAAAG
  GGTGGGGGAG AAAAAGTGGC CCCATATTCC TTCCTTGTCC TCTGATGCAG CCTGATTTAT
  TTAAGATCCA TTTGTCTCAA ATCCTGCCCC AGTTTCTCCT AAGGTCACCA CATCCCACCC
  M
  CCCACCCCCC TTTCCCCGTC GTCCTCAGAG CGGTGCATTT GACACCAGCT CAGGAATCTT
  GTAGCTTCTC GCCTTTCTGC TCCCAGAGGA ATCTGTTATT CAGCACTTCA AAGTCCAGGA
  CTTGTTTGCA CCTCTTCTTT TAAACAATAG ACCAAATTTC CTGTCACTGC CTCTCCTTAA
  AAACCCGCCT ACCCGGGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366858445	MGP_WTSI_5_137058089	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217104758					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366858445	MGP_WTSI_5_137058089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136611073 () rs orientation: forward

Symbol	Name	Function Class
Rr622654	regulatory region 622654	within coordinates
Rr622655	regulatory region 622655	1556 bp proximal
Tssr1674	transcription start site region 1674	571 bp upstream
Tssr1675	transcription start site region 1675	516 bp upstream
Tssr53860	transcription start site region 53860	639 bp upstream
Tssr53861	transcription start site region 53861	583 bp upstream
Tssr53862	transcription start site region 53862	539 bp upstream
Tssr53863	transcription start site region 53863	531 bp upstream
Tssr53864	transcription start site region 53864	476 bp upstream
Tssr53865	transcription start site region 53865	448 bp upstream
Tssr53866	transcription start site region 53866	434 bp upstream
Tssr53867	transcription start site region 53867	349 bp upstream