rs217107926 SNP Detail

Summary

• ID
  rs217107926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122268685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAAAGG AAGTGGGCCA
  CCCTGCTGGC AGTGAGGACC CATGCGCCTC TCCTCCCTCC CATAGTCCCC TTCCACCCAC
  AGCTTGGCAT ACAAGGGGAC ACAGCAGATG GCGCCGGGTG TAACAAGAGC CCCTCCCCCC
  AAGATCCGAT CGCACCGGAA CTTCTTCCGC TCCCCAGTTT ATTATTAGGA CCTGGGCAGA
  Y
  GGCTCCAGCC TGTCACTTAC CCTTCTCCTC ACATCTCTAA AGGAAAGGGG CACAGAGGCC
  TCTGATGATC AACCTGATGG AGCTGTTTTG GTTTTTTTGA CTTTGGGACA GAGTCTCCTG
  TAGTCGAGGC TGGCCTCAAA CTCAGTATGC TGCCAAGGCT GGCCTTGATC TCCTGATCCT
  CCTGCCTCCA CCTCCAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366511341	MGP_WTSI_5_122580631	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217107926					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366511341	MGP_WTSI_5_122580631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122268685 () rs orientation: forward

Symbol	Name	Function Class
Ccdc63	coiled-coil domain containing 63	within coordinates
Cpgi16543	CpG island 16543	750 bp distal
Cpgi16544	CpG island 16544	1161 bp proximal
Rr399322	regulatory region 399322	447 bp upstream
Rr619773	regulatory region 619773	954 bp distal
Rr619774	regulatory region 619774	1429 bp distal
Rr619775	regulatory region 619775	within coordinates
Rr619776	regulatory region 619776	248 bp proximal
Rr619777	regulatory region 619777	804 bp proximal
Rr619778	regulatory region 619778	1262 bp proximal
Rr619779	regulatory region 619779	1371 bp proximal
Tssr48636	transcription start site region 48636	1321 bp upstream
Tssr53079	transcription start site region 53079	201 bp upstream
Tssr53080	transcription start site region 53080	1336 bp downstream
Tssr53081	transcription start site region 53081	1354 bp downstream
Tssr53082	transcription start site region 53082	1366 bp downstream