rs217119612 SNP Detail

Summary

• ID
  rs217119612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63131303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATCCAT GTGTTTCGTT
  AAAAGCCCCT ATCACAGTCT TCCTTTATTA TCTCTGTTAT CTTTGTACTA TTGGCAGAGG
  ACAAGAACAG GAATAGTTCA TGATAAAGTG AGAGTGGAGT CACCCATCCA GATGTGCCTC
  TCTACCCTAA GTTGCTCTTT CTGATTTGTG TTACAGTTTA TATGTGTTCA GAATCACGTG
  Y
  AATTTCTTTG TCCCTATCCA TTAACAGTGG CTCACTTCCC AAGCAGAGGC TTGCATACTG
  TAGGAGCCCT ATCCCCCTTT TGTTTTACAG CTTCTTTGGG CTGGAATATT TGGAGCACTG
  ATTATGTCCC AGATTCCAGG CTGGCGATGG GGTTATAGAG GCATCAGGAC AGTGACAGCA
  CTGTGATGTG CGGATAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321144707	CHEV_4_62874100	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217119612					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63131303 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	943 bp upstream
Cpgi14368	CpG island 14368	906 bp proximal
Rr593488	regulatory region 593488	610 bp proximal
Rr593489	regulatory region 593489	874 bp proximal
Rr593490	regulatory region 593490	1396 bp proximal
Rr593491	regulatory region 593491	1879 bp proximal
Tssr1192	transcription start site region 1192	958 bp upstream
Tssr37533	transcription start site region 37533	1022 bp upstream
Tssr37534	transcription start site region 37534	1068 bp upstream