rs217128589 SNP Detail

Summary

• ID
  rs217128589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37276766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGCCGC GGTCCCGCGG
  TCTGCTGGGA TTCAGCGGGT CGGGGATGAA GAAGGTGAGG CTGGAGTAGA TGGAGTGACA
  GGGCGTGCAC GATCGCAGTC CGCCGCCACT TGGGTGCGGA ATCCGAGCTG GACTTGCGGA
  GCGCCCCCTC CCCCTCCGTT TCTCCCTCCC TCTCCTTAGA GCATCAGCGG CGGCGGCGGC
  R
  GCTGGCAGTC GCAGAAAATC GAGACCCGCG GACCGCCTGG AGGCGAGTGG AGGAGCTGGG
  ATATGGGGAG TCAGCGGGGG CGGCAGGGCC CGGAGCCCTT GAGAACGCTT GGGAGGGGAG
  CCGTCTCGGG CATTTGTAGT GCGTGAGAGG TGAAGAGCGG CGAGGGCGGA GGCGGGGCCC
  GGGCCCGGCG TGGAGCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss400290396	MGP_WTSI_18_37303367	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217128589					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400290396	MGP_WTSI_18_37303367	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37276766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9898	CpG island 9898	within coordinates
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Pcdha1	protocadherin alpha 1	Intron
Pcdha2	protocadherin alpha 2	Intron
Pcdha3	protocadherin alpha 3	Intron
Pcdha4	protocadherin alpha 4	Intron
Pcdha4b	protocadherin alpha 4B	Intron
Pcdha5	protocadherin alpha 5	Intron
Pcdha6	protocadherin alpha 6	Intron
Pcdha7	protocadherin alpha 7	Intron
Pcdha8	protocadherin alpha 8	Intron
Pcdha9	protocadherin alpha 9	Intron
Pcdha10	protocadherin alpha 10	Intron
Pcdha11	protocadherin alpha 11	Intron
Pcdha12	protocadherin alpha 12	Intron
Pcdhac1	protocadherin alpha subfamily C, 1	Intron
Pcdhac2	protocadherin alpha subfamily C, 2	mRNA-UTR
Rr536246	regulatory region 536246	200 bp distal
Rr536247	regulatory region 536247	78 bp distal
Rr536248	regulatory region 536248	29 bp proximal
Tssr150691	transcription start site region 150691	17 bp downstream
Tssr150692	transcription start site region 150692	1 bp upstream