rs217139348 SNP Detail

Summary

• ID
  rs217139348
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136804319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTCAAA GTGTGCGACA
  CTTTCCTACA GGCTACATCT CCTGTGGCTC CCCCTTTAAG CATTAAACAA ATCTACTTTC
  TTTCTACATT AGGAAAGGGA AGATCCCGAG GTAAATTTGA GACTCTAATT CCCTTGGCTC
  CTTAGGTGGG ACTCTGTAAG TTGTTTTAGT TAATGCTTTT TTTCATCAAG CGTTCAGCTG
  G
  CCGGCTCCCT GCTGCTTCCC AGATATTTCA GAACTGATCG GTGTCGATTA TGTCATTACA
  GATGTTTCTC TATCAGAAAG CAGAAGGGGC AGGAGTTTGG GAAGAAGGGA AGAGAAGGGT
  ACTGACTATA GGGAACTACA AAAAGGCACG GATACAACAA ATTCTATTTT TGATCTTTTC
  TTTAGTGTTT CCCTTCTTAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	SM/J
ss370220295	MGP_WTSI_6_136775842	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	SM/J
rs217139348					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370220295	MGP_WTSI_6_136775842	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136804319 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	305 bp upstream
Cpgi18110	CpG island 18110	248 bp proximal
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	within coordinates
Rr640073	regulatory region 640073	902 bp proximal
Rr640074	regulatory region 640074	1533 bp proximal
Tssr2044	transcription start site region 2044	1136 bp upstream
Tssr59337	transcription start site region 59337	424 bp upstream
Tssr59338	transcription start site region 59338	440 bp upstream
Tssr59339	transcription start site region 59339	478 bp upstream
Tssr59340	transcription start site region 59340	509 bp upstream
Tssr59341	transcription start site region 59341	1093 bp upstream
Tssr59342	transcription start site region 59342	1491 bp upstream
Tssr63834	transcription start site region 63834	1288 bp upstream
Tssr63835	transcription start site region 63835	1225 bp upstream
Tssr63836	transcription start site region 63836	393 bp downstream
Tssr63837	transcription start site region 63837	426 bp downstream
Tssr63838	transcription start site region 63838	445 bp downstream
Tssr63839	transcription start site region 63839	499 bp downstream
Tssr63840	transcription start site region 63840	730 bp downstream
Tssr63841	transcription start site region 63841	803 bp downstream
Tssr63842	transcription start site region 63842	865 bp downstream
Wbp11	WW domain binding protein 11	within coordinates