rs217141269 SNP Detail

Summary

• ID
  rs217141269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88889520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACCATAGG GTCCTGCCTT TAGGGCTTGG
  GAGGAGATTT GTCAGAGCCC ACCATCAGGA AAGAAGAGGG AGCTGCATAC AAAGGCAGCA
  CAGCTggagg gaaggggaag ggagggggaa gggaagggga agggaggggg aagggaaggg
  R
  aagggagggg gaacggagcg ggaagggaag gggaagACAG CCACAGTCCA TAGAATTGTG
  TTTTGTTTCT TTTCTTTTCC TTAAATTATT ATGTGTATGT TATTGGGGGA GGGGGGTGTC
  AATTTTGTGC AGTCTTAACC AGGGTTTTAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783679	CHEV_11_88860008	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217141269					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88889520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	403 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	393 bp downstream
Rr402858	regulatory region 402858	571 bp upstream
Rr454273	regulatory region 454273	1768 bp distal
Rr454274	regulatory region 454274	1192 bp distal
Rr454275	regulatory region 454275	within coordinates
Rr454276	regulatory region 454276	618 bp proximal
Rr454277	regulatory region 454277	1214 bp proximal
Trim25	tripartite motif-containing 25	682 bp upstream
Tssr104062	transcription start site region 104062	691 bp upstream
Tssr104063	transcription start site region 104063	748 bp upstream