rs217146457 SNP Detail

Summary

• ID
  rs217146457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43017634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGACTT TTTTGGGCCC
  TTCTCCCTGG GACTTCGGGA AGCCGCTTCA CCCGGGATCC CTCCGCTTCC CGGACTCTCC
  AAACTTGAGC AGATACTTCC GCTCAGTGCT GTCGCGGGGG ATAGAGGGAA GCGAAAAAGT
  AGTTCTGTGT GGCGAAGCGG GCACTGCTGC CTTCTTGCCC CTCGAATGCT CTCGAGGTGC
  R
  GCCCACAGTG TACAATCCAC CCGGGACAGC AGAGGAGCCA TTCCACAGTC TCGAGGAGTT
  CACGTTTAGA GGTTCTTCGG AACTCCCGGG CTGGAAACTT TTATTCTTTA AGAGAATGTA
  TTCGTTCCCG GTGTCAAATG CTTTTGATGA CTGCGTGCGA GCCCAGGTCC ACGGGCCCCC
  GACAGTGTTA GGCAAACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377380662	MGP_WTSI_9_42914422	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217146457					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377380662	MGP_WTSI_9_42914422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43017634 () rs orientation: forward

Symbol	Name	Function Class
Arhgef12	Rho guanine nucleotide exchange factor 12	565 bp upstream
Cpgi21624	CpG island 21624	within coordinates
Rr677324	regulatory region 677324	864 bp distal
Rr677325	regulatory region 677325	within coordinates
Rr677326	regulatory region 677326	1090 bp proximal
Rr677327	regulatory region 677327	1139 bp proximal
Tssr89073	transcription start site region 89073	1794 bp upstream
Tssr89074	transcription start site region 89074	546 bp upstream
Tssr89075	transcription start site region 89075	465 bp upstream
Tssr89076	transcription start site region 89076	313 bp upstream
Tssr89077	transcription start site region 89077	243 bp upstream
Tssr89078	transcription start site region 89078	171 bp upstream
Tssr89079	transcription start site region 89079	143 bp upstream
Tssr89080	transcription start site region 89080	679 bp downstream
Tssr89081	transcription start site region 89081	763 bp downstream
Tssr89082	transcription start site region 89082	798 bp downstream