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rs217152715 SNP Detail
Summary
  • ID
    rs217152715
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr12:8058570 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAAACGACA GATGGACGCT
ATTGATGTCA CAATGCATTT AGATCAATTG AGAACTGCAA TTCTATTCCA AAGAATAAGT
GACATTATTG ACCGTGTCAA ATACTTTGTT ATGAATCTTA TTGAAGATTT TAAAGTAACT
GAGAAAATCA ATACTTTTAG AGTTATAGTC CGTGAGCTAA TTGAGAAATA TGAAGTAGAC
M
AACACATCCA GGTTTTAATG GATAAATCAG TAGAGTTGGC CCACAGATAT AGCCTGAGCG
AGCCTCTTCA GAAACTCAGT AATGTGCTAC AGCGAATTGA GATAAAAGAT TACTATGAGA
AATTGGTTGG GTTTATTGAT GATACTGTTG AGTGGCTTAA AGCATTGTCT TTCAAAAATA
CCATTGAAGA ACTAAATAGA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064686 MGP_WTSI_12_8015376 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217152715 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064686 MGP_WTSI_12_8015376 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8058570 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr3782 transcription start site region 3782 126 bp upstream
Tssr112631 transcription start site region 112631 1941 bp downstream
Tssr112632 transcription start site region 112632 1910 bp downstream
Tssr112633 transcription start site region 112633 1834 bp downstream
Tssr112634 transcription start site region 112634 1689 bp downstream
Tssr112635 transcription start site region 112635 1603 bp downstream
Tssr112636 transcription start site region 112636 1138 bp downstream
Tssr112637 transcription start site region 112637 1058 bp downstream
Tssr112638 transcription start site region 112638 993 bp downstream
Tssr112639 transcription start site region 112639 751 bp downstream
Tssr112640 transcription start site region 112640 709 bp downstream
Tssr112641 transcription start site region 112641 657 bp downstream
Tssr112642 transcription start site region 112642 583 bp downstream
Tssr112643 transcription start site region 112643 494 bp downstream
Tssr112644 transcription start site region 112644 280 bp downstream
Tssr112645 transcription start site region 112645 178 bp downstream
Tssr112646 transcription start site region 112646 149 bp downstream
Tssr112647 transcription start site region 112647 12 bp upstream
Tssr112648 transcription start site region 112648 24 bp upstream
Tssr112649 transcription start site region 112649 516 bp upstream
Tssr112650 transcription start site region 112650 575 bp upstream
Tssr112651 transcription start site region 112651 646 bp upstream
Tssr112652 transcription start site region 112652 670 bp upstream
Tssr112653 transcription start site region 112653 697 bp upstream
Tssr112654 transcription start site region 112654 713 bp upstream
Tssr112655 transcription start site region 112655 731 bp upstream
Tssr112656 transcription start site region 112656 753 bp upstream
Tssr112657 transcription start site region 112657 768 bp upstream
Tssr112658 transcription start site region 112658 801 bp upstream
Tssr112659 transcription start site region 112659 854 bp upstream
Tssr112660 transcription start site region 112660 1006 bp upstream
Tssr112661 transcription start site region 112661 1237 bp upstream
Tssr112662 transcription start site region 112662 1481 bp upstream
Tssr112663 transcription start site region 112663 1716 bp upstream
Tssr112664 transcription start site region 112664 1741 bp upstream
Tssr112665 transcription start site region 112665 1906 bp upstream
Tssr112666 transcription start site region 112666 1915 bp upstream
Tssr112667 transcription start site region 112667 1962 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory