rs217167128 SNP Detail

Summary

• ID
  rs217167128
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51302740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCTCTT GCAAGCTGAC
  CTCAGAGCAC ATGCAGGTTC TGATGGGTGC GTGCCTATGC CTCTAAGCCT GTGCTTGTGG
  GAGAGATGGG GTGGGGGAGT GGGGGGGAGG GAGGGATGGA GAGAGAGAGG GAGAGAGAGA
  GAGAGGGAGG GAGGGAGGGA GAGAGAGGGG GGGGGGAGGG AGGGAGGGAG AGAGAGAGAG
  W
  TTTCTGTGGA GGATGAGGTC AGTCTCATCT CTTTCTTTAT CTGAGCACCA GAACAGTCCC
  CATTATAATC AGTTTAAAAT AAATGGCGTC TCCTCACTTC TGCAAGTTGC TCTCTTATGA
  GGTATACACA TACAGAGGGG AAAGGCGTTC TAGTACTTGT GGGAAGACTT CTTTTAAGCA
  TCATTTAAAA GAATAGGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357929583	MGP_WTSI_3_51199241	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	T	T	T	A	A	T	T	T	A	T	A	A	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217167128					SNP	A	A	A	T	T	T	T	A	A	T	T	T	A	T	A	A	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357929583	MGP_WTSI_3_51199241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51302740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	1018 bp proximal
Mgarp	mitochondria localized glutamic acid rich protein	within coordinates
Rr576308	regulatory region 576308	1197 bp proximal
Tssr33205	transcription start site region 33205	418 bp upstream
Tssr33206	transcription start site region 33206	1184 bp downstream
Tssr33207	transcription start site region 33207	1209 bp downstream
Tssr33208	transcription start site region 33208	1397 bp downstream