rs217171846 SNP Detail

Summary

• ID
  rs217171846
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84570682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGTTAC ATAACGGGGA
  AGAAACAAGA TAAATATTTC ACACCGTTAG ATGAACTTCC AGATGACAAC TAAGAAGCCA
  AGAGCCCAGA ACACACCTTA ACTCTCTAAG GGGTTGGGGG GACGGGGAGG ACGGACTTGA
  AGCCAGAAGA GGCTAAGCCT GATGATAAAA TCTGGGACCT GACTTGCAAC TTGAGTGATG
  C
  CTTTGTCCCC CGCCCCCTCC GCCCCTCCCC ACCCCCCCTT TCTAGAGGCA GGGGCTGAGC
  TCATGCCCCT ATACTTTAAG AGCGCTTCGC CAGCGGTTTT GTCCGCTAGA TAGAAATTTT
  CCAAAAAATA TCTCCCACGC TAGGCAAAAC ACTGAAAAGG AAGTTTTTTT GCGCCAAGAG
  GAGAGACATG GCGAGACAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397140837	MGP_WTSI_16_84774039	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217171846					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397140837	MGP_WTSI_16_84774039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84570682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	132 bp proximal
Jam2	junction adhesion molecule 2	329 bp upstream
Rr518531	regulatory region 518531	1162 bp distal
Rr518532	regulatory region 518532	1122 bp distal
Rr518533	regulatory region 518533	within coordinates
Rr518534	regulatory region 518534	603 bp proximal
Tssr139177	transcription start site region 139177	786 bp downstream
Tssr139178	transcription start site region 139178	139 bp downstream
Tssr139179	transcription start site region 139179	61 bp upstream
Tssr139180	transcription start site region 139180	96 bp upstream
Tssr139181	transcription start site region 139181	292 bp upstream
Tssr139182	transcription start site region 139182	342 bp upstream
Tssr139183	transcription start site region 139183	369 bp upstream
Tssr139184	transcription start site region 139184	381 bp upstream
Tssr139185	transcription start site region 139185	435 bp upstream
Tssr139186	transcription start site region 139186	469 bp upstream
Tssr139187	transcription start site region 139187	507 bp upstream
Tssr139188	transcription start site region 139188	527 bp upstream
Tssr139189	transcription start site region 139189	567 bp upstream
Tssr139190	transcription start site region 139190	634 bp upstream
Tssr141866	transcription start site region 141866	1180 bp upstream