rs217171970 SNP Detail

Summary

• ID
  rs217171970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74498535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCACGT GTCCCGGCGC
  AGCCAATGGC AGGGTCCCCG GCCGGCGCCC TCGGGGCGGG AGACGGCCCC CTGACCGTCC
  CAGGCCCCCT CCCAACCTGA ACTTCGTTTT TATAAACGTC CCGCGATGAG CTAACCTGTT
  GGAGGGCGGG CGGGCGGGCG GGCGGGCAGG AGGCGGGAGG CTCGCGGAGG GAGAGAGGAC
  R
  GGAGGGAAAG GGCGGGAGCG AGCGCGCCGC GGAACACAGC GAGGAGGGAG GAGGCGCAGC
  GCGCCATGGT GTCCTGCGCG GGGCCGAGGC CGGGGCCCGG GCCGGGCCAG GCCGGGCCAT
  GAGCCGCTCG GGGACTTGGG ACATGGATGG GCTGCGGGCG GACGGCGGGG CCGCTGGGGC
  GGCACCGGCC TCCTCCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484622	MGP_WTSI_2_74506248	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217171970					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484622	MGP_WTSI_2_74506248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74498535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11788	CpG island 11788	738 bp distal
Cpgi11789	CpG island 11789	within coordinates
Gm31790	predicted gene, 31790	511 bp downstream
Hoxd13	homeobox D13	119 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559337	regulatory region 559337	1281 bp distal
Rr559338	regulatory region 559338	within coordinates
Tssr18389	transcription start site region 18389	918 bp downstream
Tssr18390	transcription start site region 18390	16 bp upstream