rs217175475 SNP Detail

Summary

• ID
  rs217175475
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178165224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGATCCA TGAGATCGGC
  CTTGAGGCCC TTGTCGGAGA GGCGCCGCTT CTTGAGCTCC TCCTTCAGCT CCGACACCTT
  CAGCTTCTTG ACATTAACAG GCGAAGAACT CATGTTGAGG GCCCCGGTTC CCCGCTGACT
  GCTGGCTCCC TCGGCCTGTG GCGGCGGCGG CTGCTGCTGG TCGGCCCGGG CGGCGGCTGC
  K
  GCTGGAGATG GCTGAGTGCT GCTGCAGAAC GGACCCGCCT GGTGTCGAAC GGCGCCAATT
  CCTTTCACCG AGTTCGCGAG GCAAGACGCG GAGACTCGCC CGGCGCGAGC GAGCACGCAA
  CGTCCTCTCG CAGGGGCGGC GCCGCGCACG TAATATAGGC GCCCCGCCCC CTGCCGAGGC
  GAGGCCCGCT AGAGCGGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535478	MGP_WTSI_1_180267790	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217175475					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535478	MGP_WTSI_1_180267790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178165224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Gm38300	predicted gene, 38300	1942 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	572 bp upstream
Tssr317	transcription start site region 317	68 bp upstream
Tssr318	transcription start site region 318	145 bp downstream
Tssr10384	transcription start site region 10384	1736 bp downstream
Tssr10385	transcription start site region 10385	1522 bp downstream
Tssr10386	transcription start site region 10386	1445 bp downstream
Tssr10387	transcription start site region 10387	481 bp downstream
Tssr10388	transcription start site region 10388	343 bp downstream
Tssr10389	transcription start site region 10389	211 bp upstream
Tssr10390	transcription start site region 10390	312 bp upstream
Tssr10391	transcription start site region 10391	535 bp upstream
Tssr15481	transcription start site region 15481	1566 bp upstream
Tssr15482	transcription start site region 15482	1495 bp upstream
Tssr15483	transcription start site region 15483	1251 bp upstream
Tssr15484	transcription start site region 15484	541 bp upstream
Tssr15485	transcription start site region 15485	487 bp upstream
Tssr15486	transcription start site region 15486	406 bp upstream
Tssr15487	transcription start site region 15487	340 bp upstream
Tssr15488	transcription start site region 15488	7 bp upstream
Tssr15489	transcription start site region 15489	14 bp downstream
Tssr15490	transcription start site region 15490	47 bp downstream
Tssr15491	transcription start site region 15491	81 bp downstream
Tssr15492	transcription start site region 15492	115 bp downstream