rs217177590 SNP Detail

Summary

• ID
  rs217177590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC ACCTTGTTAA GTAGCTCTAA
  R
  AGACCTCTAC TTCCCAGGAG GCCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319989527	CHEV_1_137270019	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217177590					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	994 bp proximal
Rr28595	regulatory region 28595	within coordinates
Rr28596	regulatory region 28596	420 bp proximal
Shisa4	shisa family member 4	within coordinates
Tssr13840	transcription start site region 13840	1554 bp upstream
Tssr13841	transcription start site region 13841	1110 bp upstream
Tssr13842	transcription start site region 13842	232 bp upstream
Tssr13843	transcription start site region 13843	21 bp upstream
Tssr13844	transcription start site region 13844	within coordinates
Tssr13845	transcription start site region 13845	26 bp downstream
Tssr13846	transcription start site region 13846	516 bp downstream
Tssr13847	transcription start site region 13847	977 bp downstream
Tssr13848	transcription start site region 13848	1477 bp downstream
Tssr13849	transcription start site region 13849	1494 bp downstream
Tssr13850	transcription start site region 13850	1513 bp downstream
Tssr13851	transcription start site region 13851	1657 bp downstream
Tssr13852	transcription start site region 13852	1781 bp downstream
Tssr13853	transcription start site region 13853	1791 bp downstream
Tssr13854	transcription start site region 13854	1808 bp downstream
Tssr13855	transcription start site region 13855	1826 bp downstream
Tssr13856	transcription start site region 13856	1840 bp downstream