rs217183005 SNP Detail

Summary

• ID
  rs217183005
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103285087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGGCCT CATTTACTGG
  TTTGGCAGTT TAGAGAACAG TGCACAGGGA ACTTGCCAGG GCTCCTGACA CTTATTATAA
  AACGAATGAC TCCATACTCC GCTTTAATCT ATACATTAGT CACAGGAGCT TACTAAAAAG
  ATAGACAAGT GCCCCTATAA AGTCAAGCAC GCCAGCAAGA CATTTGACTT GTAGATGAAG
  K
  ATGACTCACA GGAATCTGAG TGGAGCTATT GTCCCCCTTA TGATCTCTCC CTCCATGGTC
  AGGGAGGGCG GCTTGTTCTT TGGCTCTCAG ATCGTGTTCA GCACTATCAG GTCAGGGGAG
  CCCAGTGGTC TGTCGTAAAT CACATAAGCA GTGCCAGCCC GATGCCTTGA GATCTATGCT
  GCTGTTCCTC ATCTGCTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295899	MGP_WTSI_14_103446868	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217183005					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295899	MGP_WTSI_14_103446868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103285087 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	within coordinates
Gm41235	predicted gene, 41235	within coordinates
Rr496962	regulatory region 496962	1042 bp proximal
Tssr4512	transcription start site region 4512	1428 bp upstream
Tssr126971	transcription start site region 126971	631 bp downstream
Tssr126972	transcription start site region 126972	1229 bp upstream
Tssr126973	transcription start site region 126973	1350 bp upstream
Tssr126974	transcription start site region 126974	1604 bp upstream
Tssr126975	transcription start site region 126975	1614 bp upstream
Tssr126976	transcription start site region 126976	1631 bp upstream
Tssr126977	transcription start site region 126977	1653 bp upstream
Tssr126978	transcription start site region 126978	1694 bp upstream
Tssr126979	transcription start site region 126979	1720 bp upstream
Tssr126980	transcription start site region 126980	1740 bp upstream
Tssr126981	transcription start site region 126981	1951 bp upstream
Tssr126982	transcription start site region 126982	1986 bp upstream
Tssr130073	transcription start site region 130073	783 bp upstream
Tssr130074	transcription start site region 130074	712 bp downstream
Tssr130075	transcription start site region 130075	757 bp downstream
Tssr130076	transcription start site region 130076	774 bp downstream
Tssr130077	transcription start site region 130077	1049 bp downstream
Tssr130078	transcription start site region 130078	1063 bp downstream
Tssr130079	transcription start site region 130079	1088 bp downstream