rs217183223 SNP Detail

Summary

• ID
  rs217183223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:135501385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCCCAG CCCCGCCGGG
  CGCCGCACTG GGCATGCTCC GTAGCCCGGC AGGTTGGGGC TGCGAGGCGA CGGCTTGGGC
  TCCAGAGGCA GCGTCGCGGC CGGGAGTAGG GGCGGCGGGC CCGGGGCCGC ACGGGGCCCG
  GCTCGGCGGG AGCGGCGGGC GGGCGGCGCC CTGGGCAGCG GGCGGCCGAG GTGAGCGCAG
  Y
  GGGGAGGCGC TGGCCGGTGG GGGGCGGAGG CGGCGGAGGG CGGGGCGGCG CCGGAGGGGC
  TCGGCGGCCG CGGCGGCGGG GAGGGGGTGG CGGCGCGCGA GCGGCTCAGG AGCCGCGCCG
  CAAACAGGCT CTCACACGCG CGCACACACA CACACACACA CACACACACA CACACAGACA
  CTCACACGCG CGCGCGCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss355784493	MGP_WTSI_2_135485201	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs217183223					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355784493	MGP_WTSI_2_135485201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:135501385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12321	CpG island 12321	within coordinates
Plcb4	phospholipase C, beta 4	within coordinates
Rr55690	regulatory region 55690	within coordinates
Tssr20369	transcription start site region 20369	291 bp downstream
Tssr20370	transcription start site region 20370	108 bp downstream
Tssr20371	transcription start site region 20371	75 bp upstream
Tssr20372	transcription start site region 20372	128 bp upstream
Tssr20373	transcription start site region 20373	160 bp upstream
Tssr20374	transcription start site region 20374	220 bp upstream