rs217185948 SNP Detail

Summary

• ID
  rs217185948
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13442570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGTGAA ACTAACGCAG
  ACCTTCAAAG ATCTCACCTG GTGCTGAGAT CCAGAACGCG GTCACTATCA ACATATGCCA
  TTTTAAAACC GGGCCTCGCA GTTACTGCCA CATCCTGAAG TGGCTTTAGA CTTTGTCATG
  TCTAAAACAA CGCCTCTCGC AGCACCAGAG AAAAGCAATA TCTTCGCGCA CCTATGCAGG
  K
  CTCCCCGGGT CACAGATTCT GTGAGTGACA CTATTCCACA AACCCAGGTG CGGGTGACCA
  AGGGACGCGC CAGAGTGGAG GGCTCGCGGC GTCTCCAAGG CTCCCCCGCC CCGCCTGCAA
  CTCAGCCCTA ACTGGACGGA AGAAACCCCG CCTCCTTCCT GCCTCTGGCT CCCACCATTG
  GCTTACCGGT ACCCGGCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348676297	MGP_WTSI_1_13362427	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217185948					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348676297	MGP_WTSI_1_13362427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13442570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi41	CpG island 41	within coordinates
Gm29570	predicted gene 29570	104 bp upstream
Gm70663	predicted gene, 70663	1882 bp downstream
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr395968	regulatory region 395968	61 bp upstream
Rr407893	regulatory region 407893	within coordinates
Rr407894	regulatory region 407894	83 bp proximal
Rr407895	regulatory region 407895	164 bp proximal
Rr407896	regulatory region 407896	1326 bp proximal
Rr407897	regulatory region 407897	1727 bp proximal
Rr407898	regulatory region 407898	1913 bp proximal
Tssr5965	transcription start site region 5965	570 bp upstream
Tssr10989	transcription start site region 10989	88 bp downstream
Tssr10990	transcription start site region 10990	1296 bp downstream
Tssr10991	transcription start site region 10991	1533 bp downstream
Tssr10992	transcription start site region 10992	1681 bp downstream
Tssr10993	transcription start site region 10993	1726 bp downstream
Tssr10994	transcription start site region 10994	1775 bp downstream
Tssr10995	transcription start site region 10995	1874 bp downstream