rs217190276 SNP Detail

Summary

• ID
  rs217190276
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCATGA GATGTGGAGG
  AGGGAGCTTG GCCAAGATCT TCCCTGCAGC AGGGGCTGGG TAGGGCGTAG AGGAGAGCCA
  GTGTCCCAGA CCCTCCCACT CCTCCCTGGT AAGCTGCAGT CTTGGGGACT AGAGCTTTGG
  AAAGAGAGGC TCAGCAGCTG GGCGAGGCAA CCTCCAGGTA CTCAGCCCAA GGGGACACCA
  S
  GACCAGGGCA GGAGGCCCCA GCTTCTGTGT TGGGCTAGGG TTCACTTCTC ACATCTCAGG
  GTGGCTCTGG CCCTGGGGCT ATGGGTTTGG CATCCTGATA CCAGCATCCT TAATGTGTCA
  GCATCTGAGA GAAGAGGCAG TGGGTCTTAA GTATGGGGTC CGGGCTCCAA GGCCAACGCC
  TAGGCTTCAT GGCCATGGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318873	CHEV_4_130380854	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217190276					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552250 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39282	transcription start site region 39282	1892 bp downstream
Tssr39283	transcription start site region 39283	1812 bp downstream
Tssr39284	transcription start site region 39284	1604 bp downstream
Tssr39285	transcription start site region 39285	1540 bp downstream
Tssr39286	transcription start site region 39286	1473 bp downstream
Tssr39287	transcription start site region 39287	1459 bp downstream
Tssr39288	transcription start site region 39288	1415 bp downstream
Tssr39289	transcription start site region 39289	1294 bp downstream
Tssr39290	transcription start site region 39290	1287 bp downstream
Tssr39291	transcription start site region 39291	1141 bp downstream
Tssr39292	transcription start site region 39292	1058 bp downstream
Tssr39293	transcription start site region 39293	927 bp upstream
Tssr39294	transcription start site region 39294	1082 bp upstream
Tssr39295	transcription start site region 39295	1248 bp upstream
Tssr39296	transcription start site region 39296	1274 bp upstream