rs217191906 SNP Detail

Summary

• ID
  rs217191906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48530575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGGTTC GAGATGGCTG
  TAGCAAGCAC CCACCTGTGC ACTGATCCGG GCTGCGGACG GAGCGCACGA GCCCGGGTTC
  CGATGGAGCA CGCACCGAGC CTGCATCGGG GGAGATGCTG AAGTTTCTCG CCTGACACAC
  ACGTGCACAG GCTCAGAAGG AAGGACTTGT GAAGTGGCCT GAGAACAACC CTCCAATTCA
  S
  CCTCTGCGCT CTAAGCGCAC GACCGGGCAT TTACAAAGGG CTTTGGGATC TTGACCCCCT
  TTTTCAGGCT TCTTTCAATA CACGAAGTAC TGGGGCGAGG GAAGGATTCC CTAGGTGCCG
  AAATCACCGC GATGCCAAAG CGCACCGTAC GCTGCGCTCC CGGTCCCAGG TACAGTCCCC
  AGCAGTAGCC CGCGTCCCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371266112	MGP_WTSI_7_56136197	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217191906					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266112	MGP_WTSI_7_56136197	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48530575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19137	CpG island 19137			within coordinates
E2f8	E2F transcription factor 8			Intron
				mRNA-UTR
Gm2788	predicted gene 2788			within coordinates
Rr400335	regulatory region 400335			119 bp upstream
Rr400336	regulatory region 400336			822 bp upstream
Rr646935	regulatory region 646935			1447 bp distal
Rr646936	regulatory region 646936			940 bp distal
Rr646937	regulatory region 646937			within coordinates
Rr646938	regulatory region 646938			204 bp proximal
Rr646939	regulatory region 646939			558 bp proximal
Rr646940	regulatory region 646940			759 bp proximal
Tssr66768	transcription start site region 66768			505 bp upstream
Tssr66769	transcription start site region 66769			1037 bp upstream
Tssr72630	transcription start site region 72630			152 bp downstream
Tssr72631	transcription start site region 72631			165 bp downstream
Tssr72632	transcription start site region 72632			205 bp downstream
Tssr72633	transcription start site region 72633			777 bp downstream
Tssr72634	transcription start site region 72634			814 bp downstream
Tssr72635	transcription start site region 72635			1524 bp downstream