rs217192399 SNP Detail

Summary

• ID
  rs217192399
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100574186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTTA GACAGGGCCT
  TGAGGGGCCT GGAGAGTTGA TCCAGTAGTT AAGGTCTTGC AGAGAATCCA GGTTCTGTTC
  CCAGCACCCA CATGGCGGGT TCCAACTGTC TTAATTCTGG GTCAAGGGGA TCTATGCCCT
  TCTCCGGCCT CTGCTGGTGC CAGGCACACC CACAATGCCA CATTTACTTT TAATTAAAAA
  W
  ATTTTTTGAG GCATGAACCT CCATACCTGG CTAATTTAAT TTTTAATTTT TAATTTGGTG
  TATGTGCCTG AAGAGGCCAA AGAAAGTCTG ATCCTCTGGG TCTGGAGTTA CAGGAGCTGG
  TAGCTTGTAA GCAGCCTGAT GTAGGTGCTG GGAACTGAAC TCTGGCTCTC TGGGATAGCA
  GGAAACACTT CATGGCTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395181577	MGP_WTSI_15_100506736	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217192399					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395181577	MGP_WTSI_15_100506736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100574186 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509795	regulatory region 509795	1891 bp distal
Rr509796	regulatory region 509796	637 bp proximal
Tssr4720	transcription start site region 4720	1838 bp upstream
Tssr4721	transcription start site region 4721	731 bp upstream
Tssr133153	transcription start site region 133153	1874 bp downstream
Tssr133154	transcription start site region 133154	1672 bp downstream
Tssr136461	transcription start site region 136461	1809 bp upstream
Tssr136462	transcription start site region 136462	1717 bp upstream
Tssr136463	transcription start site region 136463	1687 bp upstream
Tssr136464	transcription start site region 136464	1646 bp upstream
Tssr136465	transcription start site region 136465	1623 bp upstream
Tssr136466	transcription start site region 136466	1588 bp upstream
Tssr136467	transcription start site region 136467	1585 bp upstream
Tssr136468	transcription start site region 136468	943 bp upstream
Tssr136469	transcription start site region 136469	903 bp upstream
Tssr136470	transcription start site region 136470	891 bp upstream
Tssr136471	transcription start site region 136471	869 bp upstream
Tssr136472	transcription start site region 136472	858 bp upstream
Tssr136473	transcription start site region 136473	1779 bp downstream
Tssr136474	transcription start site region 136474	1809 bp downstream
Tssr136475	transcription start site region 136475	1868 bp downstream