rs217196390 SNP Detail

Summary

• ID
  rs217196390
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7165366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATCTT ATCTGGTGAA
  GTGGACATTC ATCCACCCGT GTGTCTTTAC ATCTCCCTGT ATCTGTGGCT CTCTCTACAA
  ATTTATATCC CCTTTAAAAA AATTATGTCT TAATTTTAGT AAAATTTAGT TCTCCCTTAT
  TTGATACTAT AAATAAGAAT GATAAAATTT TGGACCTTTA CAAAGAAAAA AATATGAGAC
  M
  CGTGAAGGCC AGAGCTGCCA AGACACAGCA CCCCCAGTTT TTGCATTATT CCTTCCTCAT
  AGAGTTTAGG TCGTGGCTAG AGTTAACACA GTCTACCAGA AAGTGTCCCA GTTGTTCCTT
  CTTTTTTCCC TATGTACTAA CGCTGAAGAA CAGGGCCTCT GACTTCATTG GAAAATTGAA
  AGAAAAAAAT CCCCTAGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382314190	MGP_WTSI_11_7115369	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217196390					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382314190	MGP_WTSI_11_7115369	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7165366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	854 bp distal
Gm36565	predicted gene, 36565	1725 bp upstream
Igfbp3	insulin-like growth factor binding protein 3	mRNA-UTR
Rr442461	regulatory region 442461	953 bp distal
Rr442462	regulatory region 442462	421 bp distal
Rr442463	regulatory region 442463	375 bp proximal
Tssr106776	transcription start site region 106776	1945 bp upstream
Tssr106777	transcription start site region 106777	1912 bp upstream
Tssr106778	transcription start site region 106778	1751 bp upstream
Tssr106779	transcription start site region 106779	1543 bp upstream
Tssr106780	transcription start site region 106780	1507 bp upstream
Tssr106781	transcription start site region 106781	1437 bp upstream
Tssr106782	transcription start site region 106782	1376 bp upstream
Tssr106783	transcription start site region 106783	1187 bp upstream