rs217197722 SNP Detail

Summary

• ID
  rs217197722
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74720482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATTAAC AGGTAACTGA
  CTATCCCTAG CACTGAGAGT AATTGCATCG GCTTCGTTGT GCCCATAATA TTCTAGTGCT
  TTTCAATGCT AACTGTACGA ATGGAGATTG TATGGCTTTC CACCAAAGAG AGTTCCAGAT
  GTAGGATATT TTTGTTGTCC TAATCAAGAA GATGTAAGTG CTCAGCCCCC TTCCTGAACT
  K
  CAGTTTGATA GTTCTTCACT TTTGCGAGGA CCCGAGGTGG TAAGAGGCAG CTGGCGGTTG
  AGAGAGGTCT GACTAGACTA CGAGTTGCTC AATGAACAAG GAGCAGTTGG AGTAGTCCCT
  TCACTTGGGC CTCAGTTTTC TTACCTGCAA AGTGCAATGA TTTGGGCAAG CTGACTTCAA
  AGATCTTTCT GACTGTACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323749905	CHEV_11_74643158	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217197722					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74720482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	43 bp proximal
Gm74357	predicted gene, 74357	289 bp downstream
Mnt	max binding protein	1264 bp upstream
Rr402716	regulatory region 402716	898 bp downstream
Rr402717	regulatory region 402717	575 bp upstream
Rr450974	regulatory region 450974	1370 bp distal
Rr450975	regulatory region 450975	876 bp distal
Rr450976	regulatory region 450976	428 bp proximal
Rr450977	regulatory region 450977	1143 bp proximal
Rr450978	regulatory region 450978	1320 bp proximal
Rr450979	regulatory region 450979	1561 bp proximal
Tssr102911	transcription start site region 102911	1232 bp upstream
Tssr102912	transcription start site region 102912	1251 bp upstream
Tssr102913	transcription start site region 102913	1279 bp upstream
Tssr102914	transcription start site region 102914	1558 bp upstream
Tssr109144	transcription start site region 109144	235 bp downstream
Tssr109145	transcription start site region 109145	1003 bp downstream