rs217200089 SNP Detail

Summary

• ID
  rs217200089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83716356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACTATCAA GAGTAAACCA GAGCAAAAAC
  ACAGCATCTG CGCCATTTCT CGCCCATGAA ACCGTTCCCC TGGACCACAC AGTCTGCTAG
  GGGAGCTGGG TACCATTGAG AAAGCCTAGA GAAGCGTTTC TCCTAAGAGC AGCTGAGCTC
  R
  TAACTGAGAC AGCATCACGG GGATGGGGGC GGGGGGGGGG AATGGTTCGG AGAAAGGAGC
  TCAGCCAGGA TGTCCCGACA GGGAGGGGAC CAGAATTCTA ACAAAGAGAA GGGCGGGTCT
  TGGGTTGAAG GCGAGGCCAG GGCTCCCTGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323046423	CHEV_9_83727910	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217200089					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83716356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	45 bp proximal
Gm57060	predicted gene, 57060	within coordinates
Rr383689	regulatory region 383689	within coordinates
Tssr86358	transcription start site region 86358	342 bp upstream
Tssr86359	transcription start site region 86359	381 bp upstream
Tssr90761	transcription start site region 90761	240 bp downstream
Ttk	Ttk protein kinase	386 bp upstream